PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0800010292
Common NameOT_ostta08g02980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 305aa    MW: 33669.9 Da    PI: 8.2712
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0800010292genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05158179323
                 ETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                 C+ Cgk Fs+k + +rH  + H
  0800010292 158 CGVCGKAFSTKQMQERHEDSaH 179
                 *****************88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035525109131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5121157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.9156179IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159156184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-4158175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280158179IPR007087Zinc finger, C2H2
SMARTSM003550.088186211IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951186216IPR007087Zinc finger, C2H2
PROSITE patternPS000280188211IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-8209243No hitNo description
Gene3DG3DSA:3.30.160.603.1E-11209244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.015217241IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616217246IPR007087Zinc finger, C2H2
PROSITE patternPS000280219241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRRREHGLW RRRFLNELSS ATAHAECTLA DACELAYGCE RLREVFRRAH GAENEDGDVA  60
AALGEIRGLL KVVDEETYAR GIDGDAHVAI EGDEPMGERG RGRAGARRAE CPFCKKKFVE  120
SHLPSHVAKQ HTGARPVKCS HVGCDEYFAD ERAMRRHCGV CGKAFSTKQM QERHEDSAHA  180
ERKKTIPCPV DGCTVMFSNV GSISDHMKRA HSNAKPYACT YPGCSAKFAT SSDKARHFRT  240
HFGDNARPGA ASRSMSVHLS QSRSELVRKR ARARSFEDDL VPELTDPSLM SKWLLVGGDE  300
ASEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-131352414117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003080862.10.0FOG: Zn-finger (ISS)
TrEMBLA0A090M8Q10.0A0A090M8Q1_
STRINGQ013A00.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-13transcription factor IIIA
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]